PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006859-PA
Common NameOsI_06400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 347aa    MW: 37181.4 Da    PI: 9.7819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006859-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17178211134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  BGIOSGA006859-PA 178 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211
                       *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13169212No hitNo description
SMARTSM004011.1E-16172223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268176208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.34E-12177205No hitNo description
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15178211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QIYGDQGLRR  60
QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM IQRSSYDPYD IESNNKQHAN  120
GSTSKWMSTP PMKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD  180
CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMAAAANG GAAVAPAKSV AAAPVNNKPA  240
AKKEKRAADV DRSLPFKKRC KMVDHVAAAV AATKPTAAGE VVAAAPKDQD HVIVVGGENA  300
AATSMPAQNP ISKAAAASPA FFHGLPRDEI TDAAMLLMTL SCGLVHS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.537330.0leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329848160.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996070.0AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625859.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA2X2I30.0A2X2I3_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA006859-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-16GATA family protein